PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G196100.1
Common NamePHAVU_007G196100g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 520aa    MW: 55588 Da    PI: 8.9432
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G196100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-0591113123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C++C+k F r  nL+ H r H
  Phvul.007G196100.1  91 FICEICNKGFQRDQNLQLHRRGH 113
                         89*******************88 PP

2zf-C2H211.20.0012167189123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H + +
  Phvul.007G196100.1 167 WKCDKCSKKYAVQSDWKAHSKIC 189
                         58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.09E-690113No hitNo description
Gene3DG3DSA:3.30.160.601.4E-590113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.84591113IPR007087Zinc finger, C2H2
PfamPF121716.3E-591113IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.02291113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM00355220132162IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-4155188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.09E-6162187No hitNo description
SMARTSM00355150167187IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MSNITSCDSG SFSTENTRED AAVKQKSEML GQFHSPHSLT STTTTNNSNG SNTNSQPPAP  60
VKKKRSLPGN PDPSAEVIAL SPNTLMATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK  120
QRTSTEVRKR VYVCPEPSCV HHNPARALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS  180
DWKAHSKICG TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKANEGQL PKIGPNLQCQ  240
QIPNLVSSLP INTNIVPNPQ IGGTSEFNHA EHKHPLSLPH ELMPMPAPKP FNNTTTMAGT  300
VFSRSLSSTS PPSLQLSSNI FEENGLHLAA GSPHMSATAL LQKAAQMGAT VTDKTFSTNM  360
APPSFGVLQQ QPNGQSFMNQ YMQSGQHDAN VNISAQYNGF GANGISGGSV GMNGVDMFNA  420
ILDQSKALSK IIEQSNRSSS GGATNGGSSA INVGGSKGSG DVMTLDFLGI GGGGAGAGGA  480
HGNFYGGSQQ AENGAPDEVW RNWSSKNAGF ESFSATSSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144938.10.0hypothetical protein PHAVU_007G196100g
SwissprotQ9SCQ61e-120IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLV7BGH70.0V7BGH7_PHAVU; Uncharacterized protein
STRINGGLYMA20G37900.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-104indeterminate(ID)-domain 2